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Species belonging to selected taxon:

Solanum habrochaites



ABOUT THIS RECORD

ID: MNEST002629
species: Solanum habrochaites
miRNA family: MIR2911
source: miRNEST

Taxonomy by NCBI:
Solanum habrochaites Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCCGGGGGACGGACTGGGAA

miRNA*
CCCAGTCCCGAACCCGTCGG

mismatches: 5
bulges: 1

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pre-miRNA
TCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCC
GGGGGACGGACTGGGAA
CGGTTCCTTCGGGGGCCTT


dot-bracket secondary structure
((((...((...)).))))..(((((((((....(((((((((((.((((((.((((((..(((((....)))))..)))))).)))))))).))))).)
)))....))))))))).
.((((((....))))))..



SIMILARITIES
miRBase peu-MIR2911: 1e-41

PMRD peu-miR2911: 1e-41

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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